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B.Liu, S.Jiang, M.Li, X.Xiong, M.Zhu, D.Li, L.Zhao, L.Qian, L.Zhai, J.Li, H.Lu, S.Shan, J.Lin, Y.Lu, X.Li, M.Tan. Proteome-wide analysis of USP14 substrates revealed its role in hepatosteatosis via stabilization of FASN. Nature Communications. 9(1),4770, 2018. 

X.Yi,B.Wang, Z.An, F.Gong, J.Li*, Y. Fu*. Quality control of single amino acid variations detected by tandem mass spectrometry. Journal of Proteomics. 187,144-151, 2018. 

W.Wang, R. Mauleon,Z.Hu,D.Chebotarov, S.Tai,Z.Wu, ..., J.Li, et al. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature. 557(7703),43-49, 2018. 

B.Wang, J.Li, X.Cheng, Q.Zhou, J.Yang, M.Zhang, H.Chen, J.Li*. NIPS, a 3D network-integrated predictor of deleterious protein SAPs, and its application in cancer prognosis. Scientific Reports. 8:6021, 2018. 

J.Xiao,A.Tanca, B.Jia, R.Yang, B.Wang,Y.Zhang J.Li*. Metagenomic Taxonomy-Guided Database-Searching Strategy for Improving Metaproteomic Analysis. Journal of Proteome Research. 6;17(4):1596-1605, 2018. 

M.Lei, J.Xu, LC.Huang, L.Wang, J.Li*. Network module-based model in the differential expression analysis for RNA-seq. Bioinformatics. 33(17):2699-2705, 2017. 

M.Zhang, B.Wang, J.Xu, X.Wang, L.Xie, B.Zhang*, Y.Li*, J.Li*. CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation. Journal of Proteome Research. 16(2):421-432, 2017. 

M.Zhang, H.Li, Y.He, H.Sun, L.Xia, L.Wang, B.Sun, L.Ma, G.Zhang, J.Li*, Y.Li*, L.Xie*. Construction and Deciphering of Human Phosphorylation-Mediated Signaling Transduction Networks. Journal of Proteome Research 14(7):2745-57, 2015.

J. Xu, L. Wang, J. Li*. Biological network module-based model for the analysis of differential expression in shotgun proteomics. Journal of Proteome Research. 13 (12): 5743-50, 2014.

Q. Wang, S. Zhang, S. Pang, M. Zhang, B. Wang, Q. Liu*,J. Li*. GroupRank: Rank Candidate Genes in PPI Network by Differentially Expressed Gene Groups. PLoS One. 9(10): e110406, 2014.